This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00005RC.1

Source

ReVSeq source accession
ENA sequence accession
ENA run accession
ENA sample accession

Sample

Scientific name
Severe acute respiratory syndrome coronavirus 2
Collection date
2024-01-18
Country
Switzerland
Consensus length
29888

Lineage and Clade

Pango lineage
JN.1
Nextclade clade
24A

Nextclade QC

Nextclade coverage
0.9955522857238405
Nextclade QC status
good
Nextclade QC score
2.777777777777778
Missing data QC score
0
Mixed sites QC score
0
Private mutations QC score
16.666666666666668
SNP clusters QC score
0
Frame shifts QC score
0
Stop codons QC score
0

Submission details

Submission ID
OZ373480
Submitting group
Date submitted
2026-06-11 11:37:15 UTC
Date released
2026-06-11 11:37:25 UTC

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions

  • C21T
  • C44T
  • C241T
  • T670G
  • G680A
  • C897A
  • C2790T
  • C3037T
  • G3431T
  • T3565C
  • G4160T
  • G4184A
  • C4321T
  • A6183G
  • A7842G
  • C8293T
  • G8393A
  • C9344T
Deletions

11288-11296, 21992-21994, 22194-22196
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue