This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00005NJ.1

Source

ReVSeq source accession
ENA sequence accession
ENA run accession
ENA sample accession

Sample

Scientific name
Severe acute respiratory syndrome coronavirus 2
Collection date
2023-12-20
Country
Switzerland
Consensus length
29901

Lineage and Clade

Pango lineage
JN.1
Nextclade clade
24A

Nextclade QC

Nextclade coverage
0.9953850784202254
Nextclade QC status
bad
Nextclade QC score
148.09027777777777
Missing data QC score
0
Mixed sites QC score
0
Private mutations QC score
95.83333333333333
SNP clusters QC score
0
Frame shifts QC score
75
Stop codons QC score
0

Submission details

Submission ID
OZ373410
Submitting group
Date submitted
2026-06-11 11:37:15 UTC
Date released
2026-06-11 11:37:25 UTC

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions

  • C21T
  • C44T
  • C241T
  • T670G
  • C897A
  • C2790T
  • C3037T
  • G3431T
  • T3565C
  • G4184A
  • C4321T
  • A6183G
  • A7842G
  • C8293T
  • G8393A
  • C9344T
  • A9424G
  • C9534T
Deletions

21992-21994, 22031
Insertions

ins_22034:GG

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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