This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00004T9.1

Source

ReVSeq source accession
ENA sequence accession
ENA run accession
ENA sample accession

Sample

Scientific name
Severe acute respiratory syndrome coronavirus 2
Collection date
2024-01-12
Country
Switzerland
Consensus length
29903

Lineage and Clade

Pango lineage
JN.1
Nextclade clade
24A

Nextclade QC

Nextclade coverage
0.816874561080828
Nextclade QC status
bad
Nextclade QC score
327.51551783264745
Missing data QC score
180.92592592592592
Mixed sites QC score
0
Private mutations QC score
4.166666666666667
SNP clusters QC score
0
Frame shifts QC score
0
Stop codons QC score
0

Submission details

Submission ID
OZ373074
Submitting group
Date submitted
2026-06-11 11:37:15 UTC
Date released
2026-06-11 11:37:25 UTC

Nucleotide mutations

Mutations called relative to the MN908947.3 reference

Substitutions

  • T670G
  • C897A
  • C3037T
  • G3431T
  • T3565C
  • G4184A
  • C4321T
  • C9534T
  • C10029T
  • G10447A
  • C10449A
  • G11042T
  • G11727A
  • C12789T
  • C12815T
  • C12880T
  • C14214T
  • C15714T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the MN908947.3 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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