This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00002NM.1

Source

ReVSeq source accession
ENA sequence accession
ENA segment accessions
OZ373400;OZ373401;OZ373402;OZ373403;OZ373404;OZ373405;OZ373406;OZ373407
ENA run accession
ENA sample accession

Sample

Scientific name
Influenza A virus (A/Michigan/45/2015(H1N1))
Collection date
2024-03-11
Country
Switzerland
Consensus length total
13158

Lineage and Clade

Influenza A subtype
H1N1
Assigned reference HA
H1N1
Assigned reference NA
H1N1
Assigned reference NS
H1N1
H1N1 HA clade
C.1
H1N1 HA legacy clade
6B.1A.5a.2a
H1N1 HA subclade
C.1

Nextclade QC

Nextclade coverage HA
0.1158675799086758
Nextclade coverage NA
0.30565247732030704
Nextclade coverage NS
0.13557358053302435
Nextclade QC status HA
good
Nextclade QC status NA
good
Nextclade QC status NS
good
Nextclade QC score HA
0
Nextclade QC score NA
0
Nextclade QC score NS
0
Mixed sites QC score HA
0
Mixed sites QC score NA
0
Mixed sites QC score NS
0
Private mutations QC score HA
0
Private mutations QC score NA
0
Private mutations QC score NS
0
Frame shifts QC score HA
0
Frame shifts QC score NA
0
Frame shifts QC score NS
0
Stop codons QC score HA
0
Stop codons QC score NA
0
Stop codons QC score NS
0

Submission details

Submission ID
SAMEA120641500
Submitting group
Date submitted
2026-06-11 11:36:45 UTC
Date released
2026-06-11 11:36:55 UTC

Alignment and QC

Length HA
1391
Length NA
925
Length NS
527

Nucleotide mutations

Mutations called relative to the CY121680.1, MW626056.1 & NC_026432.1 references

Substitutions

HA

  • C293A
  • T1061C
  • C1073T
  • T1076C
  • C1163T
  • G1493A
  • A1511G
  • G1566A
  • G1616A
  • C1631T
  • A1646G

NA

  • C452A
  • C893T
  • G914T
  • A1049G
  • C1187T
  • G1365A

NS

  • G250A
  • A375T
  • A391G
  • G396A
  • T414C
  • A558G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the CY121680.1, MW626056.1 & NC_026432.1 references

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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